The report was generated using the JSEQ_scRNAseq© single-cell analysis pipeline

For more information, please visit: https://github.com/jkubis96/JSEQ_scRNAseq/tree/v2.3.2


Cell content analysis



The number of genes and counts per cell



The ratio of the number of genes to counts



The percentage of ribosomal and mitochondrial genes [%]



Quality control of cell content


Number of counts



Mitochondrial gene content



Ribosomal gene content



Number of cells at different stages of the analysis



Top highly variable genes in the dataset


##  [1] "MT-ND5"          "MT-ND4L"         "RFX2"            "MT-CO1"         
##  [5] "ZFPM2"           "MT-ND6"          "RPL21"           "MT-ND4"         
##  [9] "MACROD2"         "LINC00486"       "RPL5"            "CNBD1"          
## [13] "RPL34"           "RPL6"            "ENSG00000233755" "RPS8"           
## [17] "CHST11"          "DDI1"            "YBX1"            "MT-ATP6"




Selection of analysis parameters


The cutoff for the number of principal components


ElbowPlot


JackStrawPlot for 10 PCs


The results of cell grouping

UMAP processing and visualization of cell clusters

Markers selected for the clusters
cluster p_val avg_logFC pct.1 pct.2 p_val_adj gene subclass
0 0.0000000 1.9719208 0.309 0.109 0.0000000 CNBD1 NSCs SOX2 CNBD1
0 0.0000000 2.7783316 0.182 0.027 0.0000000 ENSG00000287277 NSCs SOX2 CNBD1
0 0.0000000 2.1966145 0.171 0.040 0.0000000 GATB NSCs SOX2 CNBD1
0 0.0000000 2.8288894 0.124 0.021 0.0000000 ASIC2 NSCs SOX2 CNBD1
0 0.0000000 2.4462940 0.149 0.027 0.0000001 KCNG4 NSCs SOX2 CNBD1
0 0.0000000 2.0505821 0.127 0.048 0.0000007 RFTN1 NSCs SOX2 CNBD1
0 0.0000000 2.3130652 0.108 0.032 0.0000223 ZNRD1ASP NSCs SOX2 CNBD1
0 0.0000000 2.2729473 0.119 0.027 0.0001620 CAD NSCs SOX2 CNBD1
0 0.0000000 1.9096516 0.130 0.032 0.0009123 PPFIBP2 NSCs SOX2 CNBD1
0 0.0000002 1.9022056 0.102 0.035 0.0035507 NTPCR NSCs SOX2 CNBD1
1 0.0000000 1.9336638 0.158 0.011 0.0000000 ENSG00000229119 NSCs SOX2 SNRPD2
1 0.0000000 1.6271945 0.163 0.013 0.0000000 SNRPD2 NSCs SOX2 SNRPD2
1 0.0000000 1.8069701 0.153 0.011 0.0000000 SBDS NSCs SOX2 SNRPD2
1 0.0000000 1.9440125 0.128 0.006 0.0000001 BCCIP NSCs SOX2 SNRPD2
1 0.0000000 2.4165746 0.123 0.007 0.0000022 PNRC1 NSCs SOX2 SNRPD2
1 0.0000000 1.5870652 0.123 0.011 0.0000444 LEO1 NSCs SOX2 SNRPD2
1 0.0000000 1.8496276 0.103 0.007 0.0002808 RPL27AP5 NSCs SOX2 SNRPD2
1 0.0000000 1.5721902 0.108 0.009 0.0003707 RPS2P7 NSCs SOX2 SNRPD2
1 0.0000000 1.6122310 0.123 0.015 0.0005189 HES1 NSCs SOX2 SNRPD2
1 0.0000007 1.5411195 0.108 0.015 0.0131112 TCEAL8 NSCs SOX2 SNRPD2
2 0.0000642 1.5832379 0.125 0.024 1.0000000 TAOK3 NSCs SOX2 BAZ2B
2 0.0002889 1.0906288 0.192 0.066 1.0000000 TIA1 NSCs SOX2 BAZ2B
2 0.0003060 1.0349169 0.175 0.057 1.0000000 CEP95 NSCs SOX2 BAZ2B
2 0.0010433 1.5666764 0.108 0.026 1.0000000 ANGEL2 NSCs SOX2 BAZ2B
2 0.0014712 1.0191608 0.142 0.045 1.0000000 ITGB8 NSCs SOX2 BAZ2B
2 0.0019277 1.3261156 0.125 0.037 1.0000000 TMEM41B NSCs SOX2 BAZ2B
2 0.0034609 0.9813823 0.175 0.071 1.0000000 BAZ2B NSCs SOX2 BAZ2B
2 0.0049472 1.0589640 0.117 0.037 1.0000000 SFSWAP NSCs SOX2 BAZ2B
2 0.0049583 1.2174353 0.125 0.042 1.0000000 GOLGA3 NSCs SOX2 BAZ2B
2 0.0090092 1.0892225 0.108 0.036 1.0000000 SREBF2 NSCs SOX2 BAZ2B
3 0.0000000 7.0760196 0.208 0.000 0.0000000 LINC01937 Tanacytes RXFP1 FDX1
3 0.0000000 3.4359590 0.283 0.013 0.0000001 FDX1 Tanacytes RXFP1 FDX1
3 0.0000000 4.3002400 0.208 0.003 0.0000004 SLC9A7P1 Tanacytes RXFP1 FDX1
3 0.0000001 4.3822406 0.151 0.003 0.0011151 SERGEF Tanacytes RXFP1 FDX1
3 0.0000001 3.2068968 0.208 0.015 0.0012091 ENSG00000240963 Tanacytes RXFP1 FDX1
3 0.0000001 3.1910058 0.189 0.010 0.0017865 MAP1LC3BP1 Tanacytes RXFP1 FDX1
3 0.0000003 3.1917555 0.208 0.019 0.0063687 ENSG00000246225 Tanacytes RXFP1 FDX1
3 0.0000006 3.6708996 0.151 0.006 0.0122033 ADAM18 Tanacytes RXFP1 FDX1
3 0.0000014 3.7776130 0.151 0.007 0.0274159 PHYH Tanacytes RXFP1 FDX1
3 0.0000609 3.7337732 0.113 0.006 1.0000000 ENSG00000285082 Tanacytes RXFP1 FDX1



Cluster classification and naming based on markers


Subclasses of cells


The principal component plot



The UMAP plot



Presentation of subtypes identified with the CSSG algorithm


Quality control for cell subtypes


The principal component plot



The UMAP plot



The HDMAP plot



Markers selected for the subtypes

p_val avg_logFC cluster gene
0.0074737 7.2290167 Cholinergic SLC5A8 CNBD1 - CSMD1 GNA14
0.0074737 7.2290167 Cholinergic SLC5A8 CNBD1 - CSMD1 MIB2
0.0074737 7.3094501 Cholinergic SLC5A8 CNBD1 - CSMD1 ENSG00000253968
0.0074737 7.3094501 Cholinergic SLC5A8 CNBD1 - CSMD1 ENSG00000260660
0.0074737 7.0386413 Cholinergic SLC5A8 CNBD1 - CSMD1 CYP4F22
0.0074737 7.0386413 Cholinergic SLC5A8 CNBD1 - CSMD1 ENSG00000271776
0.0074737 7.0386413 Cholinergic SLC5A8 CNBD1 - CSMD1 ITGAX
0.0074737 7.1524951 Cholinergic SLC5A8 CNBD1 - CSMD1 CYP4F26P
0.0074737 7.1524951 Cholinergic SLC5A8 CNBD1 - CSMD1 ENSG00000272501
0.0074737 7.1524951 Cholinergic SLC5A8 CNBD1 - CSMD1 LINC01411
0.0074737 7.1524951 Cholinergic SLC5A8 CNBD1 - CSMD1 ZNF558
0.0000008 4.7958078 NSCs SOX2 SNRPD2 - RPL5 TFAP2A
0.0000384 4.5177429 NSCs SOX2 SNRPD2 - RPL5 IFT46
0.0000384 4.4652610 NSCs SOX2 SNRPD2 - RPL5 GOPC
0.0002628 4.4348527 NSCs SOX2 SNRPD2 - RPL5 ENSG00000241255
0.0002628 4.6936013 NSCs SOX2 SNRPD2 - RPL5 ENSG00000255495
0.0002628 4.3555732 NSCs SOX2 SNRPD2 - RPL5 DONSON
0.0002628 4.5023532 NSCs SOX2 SNRPD2 - RPL5 ZNF570
0.0018259 4.6854085 NSCs SOX2 SNRPD2 - RPL5 SOX10
0.0018259 4.9398482 NSCs SOX2 SNRPD2 - RPL5 MEOX2
0.0018259 4.9092160 NSCs SOX2 SNRPD2 - RPL5 ABCC9
0.0004735 4.4421482 NSCs SOX2 SNRPD2 - HSP90AB1 SEPTIN7P8
0.0004735 4.6552514 NSCs SOX2 SNRPD2 - HSP90AB1 ARMC6
0.0004735 4.6468419 NSCs SOX2 SNRPD2 - HSP90AB1 TSHZ1
0.0004735 4.4306754 NSCs SOX2 SNRPD2 - HSP90AB1 ENSG00000235979
0.0053421 4.4340940 NSCs SOX2 SNRPD2 - HSP90AB1 SLC40A1
0.0053421 4.4581488 NSCs SOX2 SNRPD2 - HSP90AB1 GPS1
0.0053421 4.4278562 NSCs SOX2 SNRPD2 - HSP90AB1 EIF2S3B
0.0053421 4.4306621 NSCs SOX2 SNRPD2 - HSP90AB1 ISY1-RAB43
0.0053421 4.4756222 NSCs SOX2 SNRPD2 - HSP90AB1 HNRNPA1P55
0.0053421 4.5847557 NSCs SOX2 SNRPD2 - HSP90AB1 HLA-DPA3
0.0008927 5.8602540 Astrocytes SSTR3 FDX1 - ZP3 LINC02864
0.0008927 6.0329901 Astrocytes SSTR3 FDX1 - ZP3 GTF2IP13
0.0008927 5.7167629 Astrocytes SSTR3 FDX1 - ZP3 ENSG00000286753
0.0008927 5.7381665 Astrocytes SSTR3 FDX1 - ZP3 ANKDD1B
0.0008927 5.8283661 Astrocytes SSTR3 FDX1 - ZP3 TTC41P
0.0008927 5.8698228 Astrocytes SSTR3 FDX1 - ZP3 ENSG00000227885
0.0008927 5.5629569 Astrocytes SSTR3 FDX1 - ZP3 SRRM5
0.0008927 6.0386121 Astrocytes SSTR3 FDX1 - ZP3 ENSG00000287347
0.0008927 5.7899514 Astrocytes SSTR3 FDX1 - ZP3 OCM
0.0008927 5.6294227 Astrocytes SSTR3 FDX1 - ZP3 F10
0.0000896 5.8433081 GABAergic TRH BAZ2B - AKAP9 SEC22B4P
0.0003144 5.7319356 GABAergic TRH BAZ2B - AKAP9 LINC01234
0.0014436 3.6896435 GABAergic TRH BAZ2B - AKAP9 HNRNPL
0.0018690 3.6155436 GABAergic TRH BAZ2B - AKAP9 RRP36
0.0031459 4.3635838 GABAergic TRH BAZ2B - AKAP9 ENSG00000288632
0.0053259 3.7883622 GABAergic TRH BAZ2B - AKAP9 NPTXR
0.0080331 3.6492492 GABAergic TRH BAZ2B - AKAP9 SMIM8
0.0080331 3.4723714 GABAergic TRH BAZ2B - AKAP9 HSPA13
0.0080331 3.5291055 GABAergic TRH BAZ2B - AKAP9 ENSG00000283196
0.0080331 3.4799282 GABAergic TRH BAZ2B - AKAP9 ZNF677
0.0065675 6.2098019 Astrocytes SLC1A3 SNRPD2 - ABCF1 C2orf73
0.0065675 6.0766083 Astrocytes SLC1A3 SNRPD2 - ABCF1 BSN-DT
0.0065675 6.0766083 Astrocytes SLC1A3 SNRPD2 - ABCF1 DPP9
0.0065675 6.0766083 Astrocytes SLC1A3 SNRPD2 - ABCF1 ENSG00000260914
0.0065675 6.0766083 Astrocytes SLC1A3 SNRPD2 - ABCF1 POP4
0.0065675 6.0766083 Astrocytes SLC1A3 SNRPD2 - ABCF1 RBP7
0.0065675 6.0766083 Astrocytes SLC1A3 SNRPD2 - ABCF1 RNU6-1064P
0.0065675 6.4939676 Astrocytes SLC1A3 SNRPD2 - ABCF1 FBLN7
0.0065675 6.4106620 Astrocytes SLC1A3 SNRPD2 - ABCF1 BASP1-AS1
0.0065675 6.4106620 Astrocytes SLC1A3 SNRPD2 - ABCF1 ENSG00000250509
0.0065675 6.4106620 Astrocytes SLC1A3 SNRPD2 - ABCF1 HDGFP1
0.0065675 6.4106620 Astrocytes SLC1A3 SNRPD2 - ABCF1 KIF28P
0.0012068 5.0930926 NSCs RXFP1 CNBD1 - SUZ12 PDE6B
0.0012068 5.2334548 NSCs RXFP1 CNBD1 - SUZ12 GPR149
0.0012068 5.0193544 NSCs RXFP1 CNBD1 - SUZ12 ENSG00000285987
0.0012068 4.9355347 NSCs RXFP1 CNBD1 - SUZ12 ENSG00000250655
0.0012068 4.9828347 NSCs RXFP1 CNBD1 - SUZ12 ENSG00000285940
0.0026101 2.7138370 NSCs RXFP1 CNBD1 - SUZ12 PDSS1
0.0041646 4.8164925 NSCs RXFP1 CNBD1 - SUZ12 CYP4Z2P
0.0041646 4.8302011 NSCs RXFP1 CNBD1 - SUZ12 AMER1
0.0041646 5.1070118 NSCs RXFP1 CNBD1 - SUZ12 LHX8
0.0045545 2.7814612 NSCs RXFP1 CNBD1 - SUZ12 MIR9-3HG
0.0002345 5.5764415 GPCs SNX5 BAZ2B - PAFAH1B1 SNAI3-AS1
0.0002848 3.4839075 GPCs SNX5 BAZ2B - PAFAH1B1 SLC35B1
0.0005893 3.3371447 GPCs SNX5 BAZ2B - PAFAH1B1 ITGA2
0.0005893 3.5672674 GPCs SNX5 BAZ2B - PAFAH1B1 DUBR
0.0008632 5.2233576 GPCs SNX5 BAZ2B - PAFAH1B1 PACS2
0.0008632 4.7672258 GPCs SNX5 BAZ2B - PAFAH1B1 LONP1
0.0008632 3.8081598 GPCs SNX5 BAZ2B - PAFAH1B1 KLF8
0.0081284 4.6383656 GPCs SNX5 BAZ2B - PAFAH1B1 RXRB
0.0081284 4.3048245 GPCs SNX5 BAZ2B - PAFAH1B1 G6PC3
0.0081284 3.1832072 GPCs SNX5 BAZ2B - PAFAH1B1 TUBB4A
0.0010755 4.9179073 NSCs SOX2 BAZ2B - COPG2 BACE1-AS
0.0010755 5.5569363 NSCs SOX2 BAZ2B - COPG2 ENSG00000281039
0.0010755 4.7730927 NSCs SOX2 BAZ2B - COPG2 CD109
0.0010755 4.5325763 NSCs SOX2 BAZ2B - COPG2 EFEMP2
0.0010755 5.4196434 NSCs SOX2 BAZ2B - COPG2 ZNRF2
0.0010755 4.9507829 NSCs SOX2 BAZ2B - COPG2 ENSG00000287299
0.0010755 5.7959583 NSCs SOX2 BAZ2B - COPG2 EIF5A2
0.0010755 5.2991641 NSCs SOX2 BAZ2B - COPG2 LRRC75A
0.0042415 4.6681631 NSCs SOX2 BAZ2B - COPG2 HMBS
0.0042415 4.3352698 NSCs SOX2 BAZ2B - COPG2 STK19
0.0037433 7.3112809 Unknow SNRPD2 - PHF20L1 ADAMTS7
0.0037433 7.2284307 Unknow SNRPD2 - PHF20L1 ENSG00000229257
0.0037433 7.2284307 Unknow SNRPD2 - PHF20L1 ENSG00000287448
0.0037433 7.2284307 Unknow SNRPD2 - PHF20L1 PCDHB9
0.0037433 7.2284307 Unknow SNRPD2 - PHF20L1 TMSB10P1
0.0037433 7.0516087 Unknow SNRPD2 - PHF20L1 LINC02730
0.0037433 6.9653550 Unknow SNRPD2 - PHF20L1 LINC-PINT
0.0037433 6.9653550 Unknow SNRPD2 - PHF20L1 PKD1P3
0.0070751 6.1356587 Unknow SNRPD2 - PHF20L1 ENSG00000267681
0.0070751 6.2151852 Unknow SNRPD2 - PHF20L1 RUNDC3A-AS1
0.0000827 4.7176649 Tanacytes TAC3 FDX1 - ENSG00000254840 FEM1A
0.0000850 4.0577533 Tanacytes TAC3 FDX1 - ENSG00000254840 ENSG00000285082
0.0003323 6.2277093 Tanacytes TAC3 FDX1 - ENSG00000254840 ALPL
0.0004865 4.1829936 Tanacytes TAC3 FDX1 - ENSG00000254840 GFRA3
0.0005897 3.5328072 Tanacytes TAC3 FDX1 - ENSG00000254840 PHYH
0.0012434 4.7637447 Tanacytes TAC3 FDX1 - ENSG00000254840 LINC00862
0.0012434 4.3318909 Tanacytes TAC3 FDX1 - ENSG00000254840 NUTM1
0.0012434 4.2801615 Tanacytes TAC3 FDX1 - ENSG00000254840 ENSG00000254367
0.0012434 4.5465115 Tanacytes TAC3 FDX1 - ENSG00000254840 PRYP2
0.0017817 3.6485430 Tanacytes TAC3 FDX1 - ENSG00000254840 ENSG00000227896
0.0001090 6.4990794 NSCs SOX2 BAZ2B - WSB1 ESRP1
0.0010861 3.1303200 NSCs SOX2 BAZ2B - WSB1 FRMD6
0.0014906 3.4556489 NSCs SOX2 BAZ2B - WSB1 RDH11
0.0025607 3.2357558 NSCs SOX2 BAZ2B - WSB1 CRLF3
0.0034034 2.5349285 NSCs SOX2 BAZ2B - WSB1 SMC5
0.0048176 2.4296187 NSCs SOX2 BAZ2B - WSB1 FNDC3A
0.0059113 2.4095719 NSCs SOX2 BAZ2B - WSB1 COL4A2
0.0064789 3.0498917 NSCs SOX2 BAZ2B - WSB1 LINC01608
0.0097709 2.5870340 NSCs SOX2 BAZ2B - WSB1 PHLDB2
0.0097709 2.8653060 NSCs SOX2 BAZ2B - WSB1 ST3GAL6
0.0006261 5.1439089 Fibroblast DCN BAZ2B - LUC7L3 ENSG00000249631
0.0006261 5.1090981 Fibroblast DCN BAZ2B - LUC7L3 ENSG00000286310
0.0012789 4.2405346 Fibroblast DCN BAZ2B - LUC7L3 UBAP1L
0.0024118 3.6992711 Fibroblast DCN BAZ2B - LUC7L3 MARCHF2
0.0024118 2.8453687 Fibroblast DCN BAZ2B - LUC7L3 EML5
0.0024118 4.6661255 Fibroblast DCN BAZ2B - LUC7L3 CANT1
0.0026301 2.6967358 Fibroblast DCN BAZ2B - LUC7L3 NDUFA6-DT
0.0026301 2.8523283 Fibroblast DCN BAZ2B - LUC7L3 ZNF354B
0.0026301 3.3471092 Fibroblast DCN BAZ2B - LUC7L3 HNRNPA3P6
0.0073816 3.2510564 Fibroblast DCN BAZ2B - LUC7L3 SYNGAP1
0.0001355 6.0825168 NSCs SOX2 CNBD1 - CNBD1 CFAP221
0.0023439 5.7857553 NSCs SOX2 CNBD1 - CNBD1 CA6
0.0023439 6.0217013 NSCs SOX2 CNBD1 - CNBD1 ENSG00000274015
0.0023439 5.9261451 NSCs SOX2 CNBD1 - CNBD1 LINC02032
0.0023439 6.1767989 NSCs SOX2 CNBD1 - CNBD1 DMBX1
0.0095367 3.8793207 NSCs SOX2 CNBD1 - CNBD1 DERL1
0.0095367 4.3319955 NSCs SOX2 CNBD1 - CNBD1 NMU
0.0095367 3.4382269 NSCs SOX2 CNBD1 - CNBD1 SLC17A1
0.0095367 5.1277466 NSCs SOX2 CNBD1 - CNBD1 TRIOBP
0.0095367 4.0580261 NSCs SOX2 CNBD1 - CNBD1 ENSG00000258210
0.0000000 2.0092189 NSCs SOX2 BAZ2B - FNBP1L FNBP1L
0.0002196 3.5506545 NSCs SOX2 BAZ2B - FNBP1L UBE2O
0.0002333 3.6783038 NSCs SOX2 BAZ2B - FNBP1L TRAF3IP2-AS1
0.0004664 4.9549704 NSCs SOX2 BAZ2B - FNBP1L ENSG00000228395
0.0004664 4.5825014 NSCs SOX2 BAZ2B - FNBP1L PBK
0.0015982 2.4026034 NSCs SOX2 BAZ2B - FNBP1L WDR59
0.0026280 2.8626985 NSCs SOX2 BAZ2B - FNBP1L GMNN
0.0045655 4.9167961 NSCs SOX2 BAZ2B - FNBP1L TSEN54
0.0045655 3.2307503 NSCs SOX2 BAZ2B - FNBP1L TMEM196
0.0077360 4.3492284 NSCs SOX2 BAZ2B - FNBP1L LZTS1
0.0000000 2.1029476 NSCs SOX2 CNBD1 - ENSG00000233755 ENSG00000233755
0.0003283 4.4221301 NSCs SOX2 CNBD1 - ENSG00000233755 ATP13A4
0.0004792 0.5801826 NSCs SOX2 CNBD1 - ENSG00000233755 LINC01681
0.0004889 6.9742158 NSCs SOX2 CNBD1 - ENSG00000233755 GYG2P1
0.0018623 4.0398172 NSCs SOX2 CNBD1 - ENSG00000233755 LINC01811
0.0018623 5.5495226 NSCs SOX2 CNBD1 - ENSG00000233755 ITGA10
0.0032067 3.1166287 NSCs SOX2 CNBD1 - ENSG00000233755 PREP
0.0046720 0.3934649 NSCs SOX2 CNBD1 - ENSG00000233755 MT-RNR2
0.0059010 2.3441487 NSCs SOX2 CNBD1 - ENSG00000233755 BICDL1
0.0068234 0.4202945 NSCs SOX2 CNBD1 - ENSG00000233755 MALAT1
0.0000000 2.2732145 Dopaminergic TACR1 CNBD1 - APIP APIP
0.0033057 2.4663690 Dopaminergic TACR1 CNBD1 - APIP KCNE1
0.0037964 4.7531050 Dopaminergic TACR1 CNBD1 - APIP ENSG00000240086
0.0058697 2.8459158 Dopaminergic TACR1 CNBD1 - APIP PGLYRP2
0.0062778 5.1274412 Dopaminergic TACR1 CNBD1 - APIP LINC02490
0.0064437 4.3715211 Dopaminergic TACR1 CNBD1 - APIP LINC00992
0.0064506 4.1629257 Dopaminergic TACR1 CNBD1 - APIP COL15A1
0.0087893 1.9084188 Dopaminergic TACR1 CNBD1 - APIP PPM1H
0.0037433 7.3990522 Fibroblast DCN BAZ2B - SFSWAP LHFPL3-AS2
0.0037433 7.3990522 Fibroblast DCN BAZ2B - SFSWAP RASA4DP
0.0037433 7.3990522 Fibroblast DCN BAZ2B - SFSWAP TMPO-AS1
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP ENSG00000284461
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP ENSG00000285968
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP ENSG00000287901
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP ENSG00000288057
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP LINC00167
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP MOCS3
0.0037433 7.3455636 Fibroblast DCN BAZ2B - SFSWAP NOMO3
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 ENSG00000260021
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 IL21-AS1
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 LINC02687
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 LINC02767
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 LRRC52
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 LRRFIP1P1
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 RPS15AP14
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 SUV39H1
0.0037433 7.5955853 NSCs SOX2 CNBD1 - SLC12A2 UGT2B26P
0.0037433 7.9570074 NSCs SOX2 CNBD1 - SLC12A2 ENSG00000231460
0.0037433 7.9570074 NSCs SOX2 CNBD1 - SLC12A2 ENSG00000286548
0.0037433 7.8246763 NSCs SOX2 CNBD1 - SLC12A2 DNAAF5
0.0037433 7.8246763 NSCs SOX2 CNBD1 - SLC12A2 ENSG00000285855
0.0037433 7.8246763 NSCs SOX2 CNBD1 - SLC12A2 RN7SL843P
0.0037433 7.8246763 NSCs SOX2 CNBD1 - SLC12A2 SETP9
0.0074737 7.1534072 NSCs SOX2 CNBD1 - NRXN3 ENSG00000269400
0.0074737 7.1534072 NSCs SOX2 CNBD1 - NRXN3 ENSG00000273493
0.0074737 7.1534072 NSCs SOX2 CNBD1 - NRXN3 GAPDHP22
0.0074737 7.1534072 NSCs SOX2 CNBD1 - NRXN3 HEBP1
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 ADGRG2
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 CSPG4P12
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 ENSG00000286182
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 GPRACR
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 LINC01487
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 PRSS42P
0.0074737 7.2861662 NSCs SOX2 CNBD1 - NRXN3 SEC14L2
0.0074737 7.3959592 NSCs SOX2 CNBD1 - NRXN3 KCNC4
0.0074737 7.3215284 NSCs SOX2 CNBD1 - NRXN3 ENSG00000225676
0.0056472 7.6877428 Unknow CNBD1 - RBFOX1 ENSG00000242391
0.0056472 7.6877428 Unknow CNBD1 - RBFOX1 LINC01815
0.0056472 7.6877428 Unknow CNBD1 - RBFOX1 OR4X2
0.0056472 7.6877428 Unknow CNBD1 - RBFOX1 PRDM16-DT
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 ENSG00000286187
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 FASTKD3
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 GFI1B
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 HOXC13-AS
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 KAT5
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 MSRB2
0.0056472 7.6100789 Unknow CNBD1 - RBFOX1 SNORD115-4
0.0047083 7.5217375 Nitrinergic NOS1 CNBD1 - LSAMP ENSG00000214546
0.0047083 7.5217375 Nitrinergic NOS1 CNBD1 - LSAMP ENSG00000234269
0.0047083 7.5217375 Nitrinergic NOS1 CNBD1 - LSAMP ENSG00000267405
0.0047083 7.5217375 Nitrinergic NOS1 CNBD1 - LSAMP LINC02906
0.0047083 7.7055480 Nitrinergic NOS1 CNBD1 - LSAMP ENSG00000238276
0.0047083 7.7055480 Nitrinergic NOS1 CNBD1 - LSAMP ENSG00000256064
0.0047083 7.7055480 Nitrinergic NOS1 CNBD1 - LSAMP Y-RNA.chr3.59
0.0047083 7.9658804 Nitrinergic NOS1 CNBD1 - LSAMP ABCB1
0.0047083 7.9658804 Nitrinergic NOS1 CNBD1 - LSAMP ENSG00000285347
0.0047083 7.9658804 Nitrinergic NOS1 CNBD1 - LSAMP SLC16A3
0.0047083 7.9658804 Nitrinergic NOS1 CNBD1 - LSAMP SMIM5
0.0047083 7.9658804 Nitrinergic NOS1 CNBD1 - LSAMP SUCNR1
0.0047083 7.9658804 Nitrinergic NOS1 CNBD1 - LSAMP TYSND1
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000261542
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000274560
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000279207
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000283627
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000289053
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000289197
0.0037433 7.3154014 Unknow CNBD1 - YY1 ENSG00000289589
0.0037433 7.3154014 Unknow CNBD1 - YY1 MSH4
0.0037433 7.5494891 Unknow CNBD1 - YY1 ENSG00000231747
0.0037433 7.5494891 Unknow CNBD1 - YY1 ENSG00000287575
0.0037433 7.5494891 Unknow CNBD1 - YY1 MAF1
0.0037433 7.5494891 Unknow CNBD1 - YY1 MIR6771
0.0037433 7.5494891 Unknow CNBD1 - YY1 NDST2
0.0037433 7.5494891 Unknow CNBD1 - YY1 PCDHB10
0.0037433 7.9544507 Unknow CNBD1 - YY1 LINC00032
0.0056472 7.7201376 NSCs SOX2 CNBD1 - SOX2 DPM2
0.0056472 7.6466771 NSCs SOX2 CNBD1 - SOX2 ENSG00000285163
0.0056472 7.6466771 NSCs SOX2 CNBD1 - SOX2 ENSG00000287211
0.0056472 7.6466771 NSCs SOX2 CNBD1 - SOX2 NOP56P1
0.0056472 7.5577108 NSCs SOX2 CNBD1 - SOX2 CD14
0.0056472 7.5577108 NSCs SOX2 CNBD1 - SOX2 LINC01692
0.0056472 7.6256127 NSCs SOX2 CNBD1 - SOX2 ADGRD2
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 CHST5
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 DYNLL2-DT
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 ENSG00000286389
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 ENSG00000288857
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 LINC01258
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 NTN4
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 QRFP
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 SLC22A7
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 SLC6A17
0.0056472 7.5497725 NSCs SOX2 CNBD1 - SOX2 ZNF544
0.0047083 7.8073246 Unknow CNBD1 - ENSG00000185641 WFDC8
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 A1BG-AS1
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 ENSG00000214147
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 ENSG00000215014
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 ENSG00000273165
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 ENSG00000288851
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 PLXNB1
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 RAB40C
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 SLC16A5
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 SLC25A41
0.0047083 7.2981508 Unknow CNBD1 - ENSG00000185641 STX18-IT1
0.0047083 7.3173803 Unknow CNBD1 - ENSG00000185641 ENSG00000236928
0.0047083 7.3173803 Unknow CNBD1 - ENSG00000185641 ENSG00000286150
0.0047083 7.3173803 Unknow CNBD1 - ENSG00000185641 LHFPL3-AS1
0.0047083 7.3173803 Unknow CNBD1 - ENSG00000185641 LINC02333
0.0047083 7.3173803 Unknow CNBD1 - ENSG00000185641 RAB1AP1



Heatmap of cell subtypes with specific markers
Log(CPM + 1) normalization of expression


Heterogeneity of cells within subtypes: number of genes vs. mean expression



Disclaimer

The analysis was performed through the non-profit and open-source pipeline JSEQ_scRNAseq©. Pipeline belongs to the part of the JBioSystem© project in which we create complex software for bioinformatics analysis. Remember in silico analysis can not be taken for granted and must be validated in vitro or in vivo. For more information go to GitHub or contact us. The JSEQ_scRNAseq© was created in the Department of Molecular Neurobiology, Institute of Bioorganic Chemistry, Polish Academy of Sciences